Structure and topology of RNA in living systems
from
Monday 30 January 2023 (08:00)
to
Thursday 2 February 2023 (12:30)
Monday 30 January 2023
08:30
REGISTRATION
REGISTRATION
08:30 - 09:00
Room: Entrance Rustico (brown building) ECT*
09:00
Introduction
-
Luca Tubiana
Introduction
Luca Tubiana
09:00 - 09:15
Room: Aula Renzo Leonardi
Session I
Session I
09:00 - 10:30
Room: Aula Renzo Leonardi
Luca Tubiana: Introduction Mauricio Comas-Garcia: Selective packaging of HIV-1 genomic RNA
09:15
Selective packaging of HIV-1 genomic RNA
-
Mauricio Comas-Garcia
Selective packaging of HIV-1 genomic RNA
Mauricio Comas-Garcia
09:15 - 10:30
Room: Aula Renzo Leonardi
10:30
Coffee break
Coffee break
10:30 - 11:00
Room: Villa Tambosi
11:00
Session II
Session II
11:00 - 12:30
Room: Aula Renzo Leonardi
Using synthetic biology to unravel RNA tertiary interactions
-
Roee Amit
Using synthetic biology to unravel RNA tertiary interactions
Roee Amit
11:00 - 11:45
Room: Aula Renzo Leonardi
11:45
Computational modeling of icosahedral shell assembly and encapsulation of flexible polymers
-
Michael Hagan
Computational modeling of icosahedral shell assembly and encapsulation of flexible polymers
Michael Hagan
11:45 - 12:30
Room: Aula Renzo Leonardi
12:30
Lunch break
Lunch break
12:30 - 14:30
Room: Villa Tambosi
14:30
Session III
Session III
14:30 - 16:00
Room: Aula Renzo Leonardi
Spiders, entanglements, and RNA structure prediction
-
Marta Szachniuk
Spiders, entanglements, and RNA structure prediction
Marta Szachniuk
14:30 - 15:15
Room: Aula Renzo Leonardi
15:15
Probing the structure and function of long viral RNAs
-
Redmond Smyth
Probing the structure and function of long viral RNAs
Redmond Smyth
15:15 - 16:00
Room: Aula Renzo Leonardi
16:00
Coffee break
Coffee break
16:00 - 16:30
Room: Villa Tambosi
16:30
Molecular Dynamics to investigate Impact of RNA modifications on RNA structural dynamics and recognition
-
Valerio Piomponi
Molecular Dynamics to investigate Impact of RNA modifications on RNA structural dynamics and recognition
Valerio Piomponi
16:30 - 17:00
Room: Aula Renzo Leonardi
Short talks I
Short talks I
16:30 - 17:30
Room: Aula Renzo Leonardi
17:00
WebTetrado, your assistant in the G4 space
-
Michal Zurkowski
WebTetrado, your assistant in the G4 space
Michal Zurkowski
17:00 - 17:30
Room: Aula Renzo Leonardi
Tuesday 31 January 2023
09:00
Physical models for the degradation resistance of xrRNAs
-
Christian Micheletti
Physical models for the degradation resistance of xrRNAs
Christian Micheletti
09:00 - 09:45
Room: Aula Renzo Leonardi
Session IV
Session IV
09:00 - 10:30
Room: Aula Renzo Leonardi
09:45
RNA as a randomly branched polymer
-
Anže Božič
RNA as a randomly branched polymer
Anže Božič
09:45 - 10:30
Room: Aula Renzo Leonardi
10:30
Coffee break
Coffee break
10:30 - 11:00
Room: Villa Tambosi
11:00
RNA secondary structures in RNA viruses
-
Manja Marz
RNA secondary structures in RNA viruses
Manja Marz
11:00 - 11:45
Room: Aula Renzo Leonardi
Session V
Session V
11:00 - 12:30
Room: Aula Renzo Leonardi
11:45
Dissecting RNA dynamics combining molecular simulations and solution experiments
-
Giovanni Bussi
Dissecting RNA dynamics combining molecular simulations and solution experiments
Giovanni Bussi
11:45 - 12:30
Room: Aula Renzo Leonardi
12:30
Lunch break
Lunch break
12:30 - 14:30
Room: Villa Tambosi
14:30
Conformational space exploration of minimal ribozymes for autocatalytic networks
-
Guillaume Stirnemann
Conformational space exploration of minimal ribozymes for autocatalytic networks
Guillaume Stirnemann
14:30 - 15:15
Room: Aula Renzo Leonardi
Session VI
Session VI
14:30 - 16:00
Room: Aula Renzo Leonardi
15:15
Simulations of RNA structural dynamics and ligand association paths: the case of an aminoglycoside-sensing riboswitch
-
Joanna Trylska
Simulations of RNA structural dynamics and ligand association paths: the case of an aminoglycoside-sensing riboswitch
Joanna Trylska
15:15 - 16:00
Room: Aula Renzo Leonardi
Wednesday 1 February 2023
09:00
RNA structural ensembles from energy landscape explorations
-
Konstantin Roeder
RNA structural ensembles from energy landscape explorations
Konstantin Roeder
09:00 - 09:45
Room: Aula Renzo Leonardi
Session VII
Session VII
09:00 - 10:30
Room: Aula Renzo Leonardi
09:45
Quantitative electrostatic force tomography for proteinaceous capsids in interaction with an approaching nanoscale substrate
-
Horacio V. Guzman
(
Universidad Autonoma de Madrid | Jozef Stefan Institute
)
Quantitative electrostatic force tomography for proteinaceous capsids in interaction with an approaching nanoscale substrate
Horacio V. Guzman
(
Universidad Autonoma de Madrid | Jozef Stefan Institute
)
09:45 - 10:30
Room: Aula Renzo Leonardi
10:30
Coffee break
Coffee break
10:30 - 11:00
Room: Villa Tambosi
11:00
Integrative modeling strategies and RNA polymorphism
-
Samuela Pasquali
Integrative modeling strategies and RNA polymorphism
Samuela Pasquali
11:00 - 11:45
Room: Aula Renzo Leonardi
Session VIII
Session VIII
11:00 - 12:30
Room: Aula Renzo Leonardi
11:45
RNA Composer-based modeling of RNA 3D structures in CASP15
-
Maciej Antczak
RNA Composer-based modeling of RNA 3D structures in CASP15
Maciej Antczak
11:45 - 12:30
Room: Aula Renzo Leonardi
12:30
Lunch break
Lunch break
12:30 - 14:30
Room: Villa Tambosi
14:30
Differential SHAPE probing to screen computationally designed RNA and to detect pseudoknot and non-canonical interactions
-
Bruno Sargeuil
Differential SHAPE probing to screen computationally designed RNA and to detect pseudoknot and non-canonical interactions
Bruno Sargeuil
14:30 - 15:15
Room: Aula Renzo Leonardi
Session IX
Session IX
14:30 - 16:00
Room: Aula Renzo Leonardi
15:15
Discussion
Discussion
15:15 - 16:00
Room: Aula Renzo Leonardi
16:00
Coffee break
Coffee break
16:00 - 16:30
Room: Villa Tambosi
16:30
Discussion
Discussion
16:30 - 17:30
Room: Aula Renzo Leonardi
Moderators: Samuela Pasquali, Luca Tubiana, Anže Božič
Thursday 2 February 2023
09:00
Deciphering the mechanism of influenza A genome packaging using genome-wide approaches
-
Roland Marquet
Deciphering the mechanism of influenza A genome packaging using genome-wide approaches
Roland Marquet
09:00 - 09:45
Room: Aula Renzo Leonardi
Session XI
Session XI
09:00 - 10:15
Room: Aula Renzo Leonardi
09:45
Computational 3D structure characterization of CCMV RNA2 fragment
-
Giovanni Mattiotti
Computational 3D structure characterization of CCMV RNA2 fragment
Giovanni Mattiotti
09:45 - 10:15
Room: Aula Renzo Leonardi
10:15
Coffee break
Coffee break
10:15 - 10:45
Room: Villa Tambosi
10:45
Knot or not in RNA?
-
Wanda Niemyska
Knot or not in RNA?
Wanda Niemyska
10:45 - 11:15
Room: Aula Renzo Leonardi
Short talks 2
Short talks 2
10:45 - 11:45
Room: Aula Renzo Leonardi
11:15
RNA Abstractions for Structural Comparison and Classification
-
Michela Quadrini
RNA Abstractions for Structural Comparison and Classification
Michela Quadrini
11:15 - 11:45
Room: Aula Renzo Leonardi